Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa
CV Pulford, BM Perez-Sepulveda, R Canals, JA Bevington, RJ Bengtsson, ...
Nature Microbiology, 1-12, 2020 -
abstractEvaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Increased risk of SARS-CoV-2 infection in staff working across different care homes: enhanced CoVID-19 outbreak investigations in London care Homes
SN Ladhani, JY Chow, R Janarthanan, J Fok, E Crawley-Boevey, ...
Journal of Infection 81 (4), 621-624, 2020 -
abstractGeographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020 -
abstractAn integrated national scale SARS-CoV-2 genomic surveillance network
T COVID
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
AP Carrieri, N Haiminen, S Maudsley-Barton, LJ Gardiner, B Murphy, ...
Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom
JG Chappell, T Tsoleridis, G Clark, L Berry, N Holmes, C Moore, M Carlile, ...
Large scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management
AJ Page, AE Mather, T Le-Viet, EJ Meader, NF Alikhan, GL Kay, ...
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
BM Perez-Sepulveda, D Heavens, CV Pulford, AV Predeus, R Low, ...
Explainable AI reveals key changes in skin microbiome associated with menopause, smoking, aging and skin hydration
AP Carrieri, N Haiminen, S Maudsley-Barton, LJ Gardiner, B Murphy, ...
When the levee breaks: a practical guide to sketching algorithms for processing the flood of genomic data
WPM Rowe
Genome biology 20 (1), 199, 2019 -
abstractStreaming histogram sketching for rapid microbiome analytics
WPM Rowe, AP Carrieri, C Alcon-Giner, S Caim, A Shaw, K Sim, JS Kroll, ...
A fast machine learning workflow for rapid phenotype prediction from whole shotgun metagenomes
AP Carrieri, WPM Rowe, M Winn, EO Pyzer-Knapp
Proceedings of the AAAI Conference on Artificial Intelligence 33, 9434-9439, 2019 -
abstractThe diversity, evolution and ecology of Salmonella in venomous snakes
CV Pulford, N Wenner, ML Redway, EV Rodwell, HJ Webster, R Escudero, ...
PLoS neglected tropical diseases 13 (6), e0007169, 2019 -
abstractAdding function to the genome of African Salmonella Typhimurium ST313 strain D23580
R Canals, DL Hammarlöf, C Kröger, SV Owen, WY Fong, ...
PLoS biology 17 (1), e3000059, 2019 -
abstractIndexed variation graphs for efficient and accurate resistome profiling
WPM Rowe, MD Winn
Bioinformatics 34 (21), 3601-3608, 2018 -
abstractPublic health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
PM Ashton, SV Owen, L Kaindama, WPM Rowe, CR Lane, L Larkin, ...
Genome medicine 9 (1), 1-13, 2017 -
abstractOverexpression of antibiotic resistance genes in hospital effluents over time
WPM Rowe, C Baker-Austin, DW Verner-Jeffreys, JJ Ryan, C Micallef, ...
Journal of Antimicrobial Chemotherapy 72 (6), 1617-1623, 2017 -
abstractDetection of the florfenicol resistance gene floR in Chryseobacterium isolates from rainbow trout. Exception to the general rule?
DW Verner-Jeffreys, T Brazier, RY Perez, D Ryder, RM Card, TJ Welch, ...
FEMS Microbiology Ecology 93 (4), fix015, 2017 -
abstractSalmonella enterica serovar Typhimurium ST313 responsible for gastroenteritis in the UK are genetically distinct from isolates causing bloodstream infections in Africa
PM Ashton, SV Owen, L Kaindama, WPM Rowe, C Lane, L Larkin, S Nair, ...
Comparative metagenomics reveals a diverse range of antimicrobial resistance genes in effluents entering a river catchment
W Rowe, DW Verner-Jeffreys, C Baker-Austin, JJ Ryan, DJ Maskell, ...
Water Science and Technology 73 (7), 1541-1549, 2016 -
abstractAntimicrobial resistance gene monitoring in aquatic environments (thesis)
W Rowe
University of Cambridge, 2016 -
abstractSearch engine for antimicrobial resistance: a cloud compatible pipeline and web interface for rapidly detecting antimicrobial resistance genes directly from sequence data
W Rowe, KS Baker, D Verner-Jeffreys, C Baker-Austin, JJ Ryan, ...
PloS one 10 (7), e0133492, 2015 -
abstractHost subtraction, filtering and assembly validations for novel viral discovery using next generation sequencing data
GM Daly, RM Leggett, W Rowe, S Stubbs, M Wilkinson, ...
PLoS One 10 (6), e0129059, 2015 -
abstractPost-transcriptional exon shuffling events in humans can be evolutionarily conserved and abundant
HH Al-Balool, D Weber, Y Liu, M Wade, K Guleria, PLP Nam, J Clayton, ...
Genome research 21 (11), 1788-1799, 2011 -
abstract